法國國家農業(yè)、食品與環(huán)境研究院（INRAE）2023年招聘博士后（細胞周期動力學的圖像分析）

法國國家農業(yè)食品與環(huán)境研究院（National Research Institute for Agriculture, Food and Environment），法國國家級科研機構，外文簡稱INRAE，2020年1月1日，由法國農業(yè)科學研究院（INRA, National Institute for Agricultural Research）和法國國家環(huán)境與農業(yè)科技研究院（IRSTEA, National Research Institute of Science and Technology for the Environment and Agriculture）合并組建，隸屬于法國高等教育，研究與創(chuàng)新部（MESRI）和農業(yè)和食品部（MAA），是農業(yè)、食品和環(huán)境領域世界頂尖的研究機構。

Post-Doc Image Analysis Of Cell Cycle Dynamics

Universities and Institutes of France

France

December 31, 2023

Contact:N/A

Offerd Salary:Negotiation

Location:N/A

Working address:N/A

Contract Type:Other

Working Time:Full time

Working type:N/A

Ref info:N/A

13 Jul 2023

Job Information

Organisation/Company

INRAE (French National Institute for Agriculture, Food, and Environment)

Department

UMR INRAE-AgroParisTech 1318

Research Field

Computer science » Other

Biological sciences » Other

Researcher Profile

Recognised Researcher (R2)

Country

France

Application Deadline

31 Dec 2023 - 23:00 (Europe/Paris)

Type of Contract

Temporary

Job Status

Full-time

Offer Starting Date

1 Sep 2023

Is the job funded through the EU Research Framework Programme?

Not funded by an EU programme

Is the Job related to staff position within a Research Infrastructure?

No

Offer Description

Job description. You will develop new algorithmic pipelines combining image processing, image analysis, and statistical learning (including deep learning) to reconstruct and exploit a 3D+time atlas of subcellular dynamics in cycling plant cells. You will provide new insights into the mechanisms controlling cell division orientation in plants and will contribute to the computational modelling of these processes. You will apply the developed methods to 3D confocal images of plant root cells collected in various genetic and experimental backgrounds within the frame of a collaborative project with David Bouchez (INRAE Versailles) and Marie-Cécile Caillaud (ENS Lyon).

Salary before taxes between 2 604,47歐元 and 3 040,97歐元; health insurance; paid leaves; contribution to public transportation costs; telecommuting; social activities. Starting date Sep 2023 or later.

Working environment. The Modelling and Digital Imaging team at Institut Jean-Pierre Bourgin in INRAE Versailles conducts original researches in image processing, applied mathematics and computational modelling to decipher plant function, development, and morphogenesis. In addition to this human-sized, friendly working environment, you will enjoy the green, unique surroundings of the Palace of Versailles gardens in which our research center is located, within less than 45 min from Paris. The project involves missions to Lyon and inter-disciplinary meetings with biologists.

References.

1. Andrey P et al (2010). Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Computational Biology, 6, e1000853. 2. Arpòn J, Sakai K, Gaudin V and Andrey P (2021). Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin. Scientific Reports, 11, 323. 3. Legland D, Arganda-Carreras I and Andrey P (2016). MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ. Bioinformatics, 32, 3532-3534. 4. Biot E, Crowell E, Burguet J, Höfte H, Vernhettes S and Andrey P (2016). Strategy and software for the statistical spatial analysis of 3D intracellular distributions. Plant Journal, 87, 230-242. 5. Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui J-C and Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Computational Biology, 15, e1006771. 6. E Laruelle, K Belcram, A Trubuil, JC Palauqui and P Andrey (2022). Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis. ELife , 11, e79224. 7. Oughou M, Biot E, Arnaud N, Maugarny-Calès A, Laufs P, Andrey P and Burguet J (2023). Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis. Quantitative Plant Biology, 4, 1-11.

Requirements

Research Field

Computer science » Other

Education Level

PhD or equivalent

Skills/Qualifications

You have a PhD or equivalent in applied mathematics, computer science, or computational biology with a strong background and experience in digital image processing and analysis. You have a solid experience in programming with an object-oriented language such as C++ or Java. You are curious and appreciate to work within a strongly inter-disciplinary environment.

Languages

ENGLISH

Level

Good

Internal Application form(s) needed

postdoc-image-analysis-versailles-2023.07.03.pdf

English

(342.76 KB - PDF)

Download

Additional Information

Selection process

Please send a resume, a motivation letter (including a brief overview of past research experience), and 2-3 references to philippe.andrey@inrae.fr.

Website for additional job details

https: // ijpb.versailles.inrae.fr/en/research-teams/modeling-and-digital- imaging…

Work Location(s)

Number of offers available

1

Company/Institute

Institut Jean-Pierre Bourgin (INRAE)

Country

France

City

Versailles

Postal Code

78026

Street

RD 10

Geofield

Where to apply

E-mail

philippe.andrey@inrae.fr

Contact

City

Versailles

Website

https: // ijpb.versailles.inrae.fr/en/

Street

RD 10

Postal Code

78000

E-Mail

philippe.andrey@inrae.fr

Phone

+33 1 3083 3350

STATUS: EXPIRED

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